J3_9OFV_018
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- 9OFV|1|f|U|2514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_018 not in the Motif Atlas
- Geometric match to J3_8CRE_019
- Geometric discrepancy: 0.0591
- The information below is about J3_8CRE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84052.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9OFV|1|f|A|2432
9OFV|1|f|U|2433
9OFV|1|f|U|2434
9OFV|1|f|G|2435
*
9OFV|1|f|C|2512
9OFV|1|f|U|2513
9OFV|1|f|U|2514
9OFV|1|f|A|2515
9OFV|1|f|U|2516
9OFV|1|f|U|2517
*
9OFV|1|f|A|2590
9OFV|1|f|A|2591
9OFV|1|f|G|2592
9OFV|1|f|A|2593
9OFV|1|f|C|2594
9OFV|1|f|A|2595
9OFV|1|f|U|2596
9OFV|1|f|U|2597
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain V
- 60S ribosomal protein L36-A
- Chain a
- Ribosome quality control complex subunit 2
- Chain j
- 60S ribosomal protein L2-A
- Chain p
- 60S ribosomal protein L8-A
Coloring options: