J3_9OFV_019
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 9OFV|1|f|G|2549, 9OFV|1|f|U|2550, 9OFV|1|f|U|2551, 9OFV|1|f|C|2552, 9OFV|1|f|U|2553, 9OFV|1|f|A|2554, 9OFV|1|f|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_019 not in the Motif Atlas
- Geometric match to J3_8CRE_020
- Geometric discrepancy: 0.1455
- The information below is about J3_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9OFV|1|f|A|2529
9OFV|1|f|G|2530
9OFV|1|f|C|2531
9OFV|1|f|U|2532
*
9OFV|1|f|A|2547
9OFV|1|f|C|2548
9OFV|1|f|G|2549
9OFV|1|f|U|2550
9OFV|1|f|U|2551
9OFV|1|f|C|2552
9OFV|1|f|U|2553
9OFV|1|f|A|2554
9OFV|1|f|G|2555
9OFV|1|f|C|2556
9OFV|1|f|A|2557
9OFV|1|f|U|2558
9OFV|1|f|U|2559
9OFV|1|f|C|2560
9OFV|1|f|A|2561
9OFV|1|f|A|2562
9OFV|1|f|G|2563
*
9OFV|1|f|U|2578
9OFV|1|f|G|2579
9OFV|1|f|A|2580
9OFV|1|f|U|2581
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain M
- 60S ribosomal protein L27-A
- Chain P
- 60S ribosomal protein L30
- Chain T
- 60S ribosomal protein L34-A
- Chain b0
- 60S ribosomal protein L25
- Chain c
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-A
- Chain p
- 60S ribosomal protein L8-A
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