J3_9OFV_022
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 9OFV|1|f|A|2887, 9OFV|1|f|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_022 not in the Motif Atlas
- Geometric match to J3_8CRE_023
- Geometric discrepancy: 0.0563
- The information below is about J3_8CRE_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_62630.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9OFV|1|f|U|2886
9OFV|1|f|A|2887
9OFV|1|f|U|2888
9OFV|1|f|C|2889
*
9OFV|1|f|G|2914
9OFV|1|f|U|2915
9OFV|1|f|U|2916
*
9OFV|1|f|A|2930
9OFV|1|f|C|2931
9OFV|1|f|U|2932
9OFV|1|f|A|2933
9OFV|1|f|A|2934
9OFV|1|f|U|2935
9OFV|1|f|A|2936
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L23-A
- Chain a0
- 60S ribosomal protein L16-A
- Chain k
- Large ribosomal subunit protein uL3
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