J3_9OFV_025
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 9OFV|1|h|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_025 not in the Motif Atlas
- Geometric match to J3_8OI5_025
- Geometric discrepancy: 0.0623
- The information below is about J3_8OI5_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9OFV|1|h|C|9
9OFV|1|h|C|10
9OFV|1|h|A|11
9OFV|1|h|U|12
9OFV|1|h|A|13
9OFV|1|h|U|14
*
9OFV|1|h|A|66
9OFV|1|h|G|67
*
9OFV|1|h|U|111
9OFV|1|h|G|112
Current chains
- Chain h
- 5S rRNA
Nearby chains
- Chain 7
- 60S ribosomal protein L21-A
- Chain f
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- Large ribosomal subunit protein uL18
- Chain r
- Large ribosomal subunit protein uL16
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