J3_9OGY_004

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

9OGY|1|2|C|1138, 9OGY|1|2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|C|1094
9OGY|1|2|C|1095
9OGY|1|2|G|1096
*
9OGY|1|2|U|1136
9OGY|1|2|U|1137
9OGY|1|2|C|1138
9OGY|1|2|C|1139
9OGY|1|2|G|1140
*
9OGY|1|2|C|1147
9OGY|1|2|A|1148
9OGY|1|2|A|1149
9OGY|1|2|A|1150
9OGY|1|2|G|1151

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

uS2 (SA)

Chain W

40S ribosomal protein S21

Chain X

Ribosomal protein S15a

Chain b

eS26

Chain c

40S ribosomal protein S27