J3_9OGY_005

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|C|1218
9OGY|1|2|C|1219
9OGY|1|2|A|1220
9OGY|1|2|G|1221
*
9OGY|1|2|C|1645
9OGY|1|2|C|1646
9OGY|1|2|A|1647
9OGY|1|2|G|1648
9OGY|1|2|U|1649
9OGY|1|2|A|1650
9OGY|1|2|A|1651
*
9OGY|1|2|U|1673
9OGY|1|2|G|1674
9OGY|1|2|A|1675
9OGY|1|2|U|1676
9OGY|1|2|U|1677
9OGY|1|2|A|1678
9OGY|1|2|A|1679
9OGY|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein S5

Chain R

Ribosomal protein S16

Chain d

Ribosomal protein S28