J3_9OGY_009
3D structure
- PDB id
- 9OGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UCUUAG*CGAGACU*AGCAAUA
- Length
- 20 nucleotides
- Bulged bases
- 9OGY|1|2|U|1342
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9OGY|1|2|U|1340
9OGY|1|2|C|1341
9OGY|1|2|U|1342
9OGY|1|2|U|1343
9OGY|1|2|A|1344
9OGY|1|2|G|1345
*
9OGY|1|2|C|1384
9OGY|1|2|G|1385
9OGY|1|2|A|1386
9OGY|1|2|G|1387
9OGY|1|2|A|1388
9OGY|1|2|C|1389
9OGY|1|2|U|1390
*
9OGY|1|2|A|1480
9OGY|1|2|G|1481
9OGY|1|2|C|1482
9OGY|1|2|A|1483
9OGY|1|2|A|1484
9OGY|1|2|U|1485
9OGY|1|2|A|1486
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S2
- Chain E
- Ribosomal protein S3
- Chain R
- Ribosomal protein S16
- Chain S
- eS17
- Chain V
- uS10
- Chain e
- eS29
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