J3_9OGY_012

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9OGY|1|2|U|1535, 9OGY|1|2|G|1603, 9OGY|1|2|G|1636

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|C|1532
9OGY|1|2|A|1533
9OGY|1|2|C|1534
9OGY|1|2|U|1535
9OGY|1|2|G|1536
*
9OGY|1|2|C|1597
9OGY|1|2|G|1598
9OGY|1|2|U|1599
9OGY|1|2|G|1600
9OGY|1|2|A|1601
9OGY|1|2|U|1602
9OGY|1|2|G|1603
9OGY|1|2|G|1604
*
9OGY|1|2|C|1635
9OGY|1|2|G|1636
9OGY|1|2|A|1637
9OGY|1|2|G|1638

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein S5

Chain T

uS13

Chain U

eS19

Chain a

eS25