J3_9P8C_029

3D structure

PDB id

9P8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 (rotate3) without E tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

9P8C|1|S2|A|45, 9P8C|1|S2|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8C|1|S2|A|40
9P8C|1|S2|G|41
9P8C|1|S2|A|42
9P8C|1|S2|U|43
9P8C|1|S2|U|44
9P8C|1|S2|A|45
9P8C|1|S2|A|46
9P8C|1|S2|G|47
*
9P8C|1|S2|C|479
9P8C|1|S2|G|480
9P8C|1|S2|C|481
9P8C|1|S2|G|482
9P8C|1|S2|C|483
9P8C|1|S2|A2M|484
9P8C|1|S2|A|485
9P8C|1|S2|A|486
9P8C|1|S2|U|487
*
9P8C|1|S2|A|512
9P8C|1|S2|G|513
9P8C|1|S2|U|514

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23