J3_9P8I_024

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9P8I|1|L5|U|4882, 9P8I|1|L5|A|4938, 9P8I|1|L5|C|4940, 9P8I|1|L5|A|4943, 9P8I|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|L5|G|4751
9P8I|1|L5|U|4752
9P8I|1|L5|U|4753
9P8I|1|L5|G|4754
*
9P8I|1|L5|C|4879
9P8I|1|L5|C|4880
9P8I|1|L5|U|4881
9P8I|1|L5|U|4882
9P8I|1|L5|C|4883
*
9P8I|1|L5|G|4936
9P8I|1|L5|C|4937
9P8I|1|L5|A|4938
9P8I|1|L5|C|4939
9P8I|1|L5|C|4940
9P8I|1|L5|G|4941
9P8I|1|L5|C|4942
9P8I|1|L5|A|4943
9P8I|1|L5|C|4944
9P8I|1|L5|G|4945
9P8I|1|L5|U|4946
9P8I|1|L5|U|4947
9P8I|1|L5|C|4948

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a