J3_9P8I_033

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

9P8I|1|S2|C|1138, 9P8I|1|S2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|S2|C|1094
9P8I|1|S2|C|1095
9P8I|1|S2|G|1096
*
9P8I|1|S2|U|1136
9P8I|1|S2|U|1137
9P8I|1|S2|C|1138
9P8I|1|S2|C|1139
9P8I|1|S2|G|1140
*
9P8I|1|S2|C|1147
9P8I|1|S2|A|1148
9P8I|1|S2|A|1149
9P8I|1|S2|A|1150
9P8I|1|S2|G|1151

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SV

Small ribosomal subunit protein eS21

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26

Chain Sb

Small ribosomal subunit protein eS27