J3_9P8I_034

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|S2|C|1218
9P8I|1|S2|C|1219
9P8I|1|S2|A|1220
9P8I|1|S2|G|1221
*
9P8I|1|S2|C|1645
9P8I|1|S2|C|1646
9P8I|1|S2|A|1647
9P8I|1|S2|G|1648
9P8I|1|S2|U|1649
9P8I|1|S2|A|1650
9P8I|1|S2|A|1651
*
9P8I|1|S2|U|1673
9P8I|1|S2|G|1674
9P8I|1|S2|A|1675
9P8I|1|S2|U|1676
9P8I|1|S2|U|1677
9P8I|1|S2|A|1678
9P8I|1|S2|A|1679
9P8I|1|S2|G|1680

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SQ

Small ribosomal subunit protein uS9

Chain SR

Small ribosomal subunit protein eS17

Chain Sc

40S ribosomal protein S28