J3_9P8I_041

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9P8I|1|S2|U|1535, 9P8I|1|S2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|S2|C|1532
9P8I|1|S2|A|1533
9P8I|1|S2|C|1534
9P8I|1|S2|U|1535
9P8I|1|S2|G|1536
*
9P8I|1|S2|C|1597
9P8I|1|S2|G|1598
9P8I|1|S2|U|1599
9P8I|1|S2|G|1600
9P8I|1|S2|A|1601
9P8I|1|S2|U|1602
9P8I|1|S2|G|1603
9P8I|1|S2|G|1604
*
9P8I|1|S2|C|1635
9P8I|1|S2|G|1636
9P8I|1|S2|A|1637
9P8I|1|S2|G|1638

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SZ

Small ribosomal subunit protein eS25