J3_9PA7_011

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|G|1969
9PA7|1|L5|A|1970
9PA7|1|L5|C|1971
*
9PA7|1|L5|G|1995
9PA7|1|L5|C|1996
9PA7|1|L5|U|1997
9PA7|1|L5|A|1998
9PA7|1|L5|A|1999
9PA7|1|L5|G|2000
9PA7|1|L5|G|2001
*
9PA7|1|L5|C|2016
9PA7|1|L5|A|2017
9PA7|1|L5|C|2018

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

Large ribosomal subunit protein uL11