J3_9PGF_009
3D structure
- PDB id
- 9PGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9PGF|1|A|A|3005, 9PGF|1|A|U|3006
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PGF_009 not in the Motif Atlas
- Homologous match to J3_7A0S_011
- Geometric discrepancy: 0.1034
- The information below is about J3_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9PGF|1|A|C|3004
9PGF|1|A|A|3005
9PGF|1|A|U|3006
9PGF|1|A|C|3007
*
9PGF|1|A|G|3032
9PGF|1|A|U|3033
9PGF|1|A|U|3034
*
9PGF|1|A|A|3048
9PGF|1|A|U|3049
9PGF|1|A|U|3050
9PGF|1|A|A|3051
9PGF|1|A|A|3052
9PGF|1|A|A|3053
9PGF|1|A|G|3054
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain L
- 39S ribosomal protein L14, mitochondrial
- Chain r
- 39S ribosomal protein S18a, mitochondrial
Coloring options: