J3_9PGF_016
3D structure
- PDB id
- 9PGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CUUCAG*CGCAAGU*AAAGACG
- Length
- 20 nucleotides
- Bulged bases
- 9PGF|1|AA|U|1270
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PGF_016 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.5862
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9PGF|1|AA|C|1268
9PGF|1|AA|U|1269
9PGF|1|AA|U|1270
9PGF|1|AA|C|1271
9PGF|1|AA|A|1272
9PGF|1|AA|G|1273
*
9PGF|1|AA|C|1302
9PGF|1|AA|G|1303
9PGF|1|AA|C|1304
9PGF|1|AA|A|1305
9PGF|1|AA|A|1306
9PGF|1|AA|G|1307
9PGF|1|AA|U|1308
*
9PGF|1|AA|A|1317
9PGF|1|AA|A|1318
9PGF|1|AA|A|1319
9PGF|1|AA|G|1320
9PGF|1|AA|A|1321
9PGF|1|AA|C|1322
9PGF|1|AA|G|1323
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A1
- 28S ribosomal protein S35, mitochondrial
- Chain AC
- 28S ribosomal protein S24, mitochondrial
- Chain AD
- 28S ribosomal protein S5, mitochondrial
- Chain AG
- 28S ribosomal protein S9, mitochondrial
- Chain AH
- 28S ribosomal protein S10, mitochondrial
- Chain AK
- 28S ribosomal protein S14, mitochondrial
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