J3_9PIJ_033
3D structure
- PDB id
- 9PIJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9PIJ|1|a|A|2518, 9PIJ|1|a|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PIJ_033 not in the Motif Atlas
- Homologous match to J3_7A0S_011
- Geometric discrepancy: 0.1735
- The information below is about J3_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9PIJ|1|a|C|2517
9PIJ|1|a|A|2518
9PIJ|1|a|U|2519
9PIJ|1|a|C|2520
*
9PIJ|1|a|G|2545
9PIJ|1|a|U|2546
9PIJ|1|a|A|2547
*
9PIJ|1|a|U|2561
9PIJ|1|a|U|2562
9PIJ|1|a|U|2563
9PIJ|1|a|A|2564
9PIJ|1|a|A|2565
9PIJ|1|a|A|2566
9PIJ|1|a|G|2567
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: