J3_9PJ7_004
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 9PJ7|1|A|U|635
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ7_004 not in the Motif Atlas
- Homologous match to J3_6CZR_077
- Geometric discrepancy: 0.1657
- The information below is about J3_6CZR_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.3
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9PJ7|1|A|U|568
9PJ7|1|A|G|569
9PJ7|1|A|G|570
*
9PJ7|1|A|C|633
9PJ7|1|A|U|634
9PJ7|1|A|U|635
9PJ7|1|A|G|636
9PJ7|1|A|A|637
*
9PJ7|1|A|U|733
9PJ7|1|A|G|734
9PJ7|1|A|A|735
9PJ7|1|A|C|736
9PJ7|1|A|G|737
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
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