J3_9PJ7_005
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UG*CACCAGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 9PJ7|1|A|U|705
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ7_005 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.2878
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9PJ7|1|A|U|654
9PJ7|1|A|G|655
*
9PJ7|1|A|C|699
9PJ7|1|A|A|700
9PJ7|1|A|C|701
9PJ7|1|A|C|702
9PJ7|1|A|A|703
9PJ7|1|A|G|704
9PJ7|1|A|U|705
9PJ7|1|A|G|706
9PJ7|1|A|G|707
*
9PJ7|1|A|C|714
9PJ7|1|A|G|715
9PJ7|1|A|G|716
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S6
- Chain K
- 30S ribosomal protein S11
- Chain O
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S18
- Chain c
- 50S ribosomal protein L2
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