J3_9PJ7_011
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUUGACAU*ACAG*CUUAUG
- Length
- 18 nucleotides
- Bulged bases
- 9PJ7|1|A|U|1200
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ7_011 not in the Motif Atlas
- Homologous match to J3_6CZR_063
- Geometric discrepancy: 0.2596
- The information below is about J3_6CZR_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.1
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9PJ7|1|A|U|974
9PJ7|1|A|U|975
9PJ7|1|A|U|976
9PJ7|1|A|G|977
9PJ7|1|A|A|978
9PJ7|1|A|C|979
9PJ7|1|A|A|980
9PJ7|1|A|U|981
*
9PJ7|1|A|A|1029
9PJ7|1|A|C|1030
9PJ7|1|A|A|1031
9PJ7|1|A|G|1032
*
9PJ7|1|A|C|1196
9PJ7|1|A|U|1197
9PJ7|1|A|U|1198
9PJ7|1|A|A|1199
9PJ7|1|A|U|1200
9PJ7|1|A|G|1201
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S3
- Chain S
- 30S ribosomal protein S14 type Z
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