J3_9PJ7_014
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UG*UGUU*GCAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ7_014 not in the Motif Atlas
- Homologous match to J3_6CZR_079
- Geometric discrepancy: 0.1975
- The information below is about J3_6CZR_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89145.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9PJ7|1|A|U|1058
9PJ7|1|A|G|1059
*
9PJ7|1|A|U|1068
9PJ7|1|A|G|1069
9PJ7|1|A|U|1070
9PJ7|1|A|U|1071
*
9PJ7|1|A|G|1084
9PJ7|1|A|C|1085
9PJ7|1|A|A|1086
9PJ7|1|A|A|1087
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain E
- Small ribosomal subunit protein uS5
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