J3_9PJ7_017
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 9PJ7|1|A|U|1226, 9PJ7|1|A|U|1288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ7_017 not in the Motif Atlas
- Homologous match to J3_6CZR_026
- Geometric discrepancy: 0.1826
- The information below is about J3_6CZR_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.5
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
9PJ7|1|A|C|1223
9PJ7|1|A|A|1224
9PJ7|1|A|A|1225
9PJ7|1|A|U|1226
9PJ7|1|A|G|1227
*
9PJ7|1|A|C|1282
9PJ7|1|A|U|1283
9PJ7|1|A|C|1284
9PJ7|1|A|A|1285
9PJ7|1|A|G|1286
9PJ7|1|A|U|1287
9PJ7|1|A|U|1288
9PJ7|1|A|C|1289
*
9PJ7|1|A|G|1320
9PJ7|1|A|U|1321
9PJ7|1|A|C|1322
9PJ7|1|A|G|1323
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S7
- Chain N
- 30S ribosomal protein S13
Coloring options: