J3_9PJ7_021
3D structure
- PDB id
- 9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Doxycycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AC*GAUAAGC*GGUGU
- Length
- 14 nucleotides
- Bulged bases
- 9PJ7|1|a|U|71, 9PJ7|1|a|A|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ7_021 not in the Motif Atlas
- Homologous match to J3_7A0S_002
- Geometric discrepancy: 0.1682
- The information below is about J3_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9PJ7|1|a|A|55
9PJ7|1|a|C|56
*
9PJ7|1|a|G|69
9PJ7|1|a|A|70
9PJ7|1|a|U|71
9PJ7|1|a|A|72
9PJ7|1|a|A|73
9PJ7|1|a|G|74
9PJ7|1|a|C|75
*
9PJ7|1|a|G|109
9PJ7|1|a|G|110
9PJ7|1|a|U|111
9PJ7|1|a|G|112
9PJ7|1|a|U|113
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain s
- 50S ribosomal protein L23
- Chain x
- 50S ribosomal protein L29
Coloring options: