J3_9PJ8_028
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CAAG*CCUAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 9PJ8|1|a|U|1791, 9PJ8|1|a|A|1793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ8_028 not in the Motif Atlas
- Homologous match to J3_7A0S_007
- Geometric discrepancy: 0.2779
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9PJ8|1|a|C|1382
9PJ8|1|a|A|1383
9PJ8|1|a|A|1384
9PJ8|1|a|G|1385
*
9PJ8|1|a|C|1789
9PJ8|1|a|C|1790
9PJ8|1|a|U|1791
9PJ8|1|a|A|1792
9PJ8|1|a|A|1793
9PJ8|1|a|A|1794
9PJ8|1|a|C|1795
*
9PJ8|1|a|G|1804
9PJ8|1|a|U|1805
9PJ8|1|a|G|1806
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
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