J3_9PJ8_033
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 9PJ8|1|a|C|2516, 9PJ8|1|a|A|2518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ8_033 not in the Motif Atlas
- Homologous match to J3_7A0S_010
- Geometric discrepancy: 0.3059
- The information below is about J3_7A0S_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9PJ8|1|a|C|2477
9PJ8|1|a|U|2478
9PJ8|1|a|C|2479
*
9PJ8|1|a|G|2503
9PJ8|1|a|A|2504
9PJ8|1|a|G|2505
*
9PJ8|1|a|C|2514
9PJ8|1|a|A|2515
9PJ8|1|a|C|2516
9PJ8|1|a|A|2517
9PJ8|1|a|A|2518
9PJ8|1|a|G|2519
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain C
- Transfer RNA; tRNA
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L5
- Chain n
- 50S ribosomal protein L18
- Chain v
- 50S ribosomal protein L27
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