J3_9PJ8_035
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CC*GUUGAU*AAUAG
- Length
- 13 nucleotides
- Bulged bases
- 9PJ8|1|a|U|3013, 9PJ8|1|a|A|3015
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ8_035 not in the Motif Atlas
- Homologous match to J3_7A0S_013
- Geometric discrepancy: 0.1899
- The information below is about J3_7A0S_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9PJ8|1|a|C|2994
9PJ8|1|a|C|2995
*
9PJ8|1|a|G|3011
9PJ8|1|a|U|3012
9PJ8|1|a|U|3013
9PJ8|1|a|G|3014
9PJ8|1|a|A|3015
9PJ8|1|a|U|3016
*
9PJ8|1|a|A|3062
9PJ8|1|a|A|3063
9PJ8|1|a|U|3064
9PJ8|1|a|A|3065
9PJ8|1|a|G|3066
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain m
- Large ribosomal subunit protein bL17
- Chain z
- 50S ribosomal protein L32
Coloring options: