J3_9PJ9_013
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ9_013 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.1312
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9PJ9|1|A|C|1048
9PJ9|1|A|G|1049
9PJ9|1|A|U|1050
9PJ9|1|A|C|1051
9PJ9|1|A|A|1052
9PJ9|1|A|G|1053
*
9PJ9|1|A|C|1092
9PJ9|1|A|G|1093
9PJ9|1|A|C|1094
9PJ9|1|A|A|1095
9PJ9|1|A|A|1096
9PJ9|1|A|C|1097
9PJ9|1|A|C|1098
*
9PJ9|1|A|G|1173
9PJ9|1|A|A|1174
9PJ9|1|A|U|1175
9PJ9|1|A|G|1176
9PJ9|1|A|A|1177
9PJ9|1|A|C|1178
9PJ9|1|A|G|1179
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS5
- Chain G
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S9
- Chain M
- Small ribosomal subunit protein uS10
- Chain S
- 30S ribosomal protein S14 type Z
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