J3_9PJ9_030
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UCGGGUC*GGUAA*UA
- Length
- 14 nucleotides
- Bulged bases
- 9PJ9|1|a|A|1460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ9_030 not in the Motif Atlas
- Homologous match to J3_7A0S_018
- Geometric discrepancy: 0.1163
- The information below is about J3_7A0S_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9PJ9|1|a|U|1420
9PJ9|1|a|C|1421
9PJ9|1|a|G|1422
9PJ9|1|a|G|1423
9PJ9|1|a|G|1424
9PJ9|1|a|U|1425
9PJ9|1|a|C|1426
*
9PJ9|1|a|G|1457
9PJ9|1|a|G|1458
9PJ9|1|a|U|1459
9PJ9|1|a|A|1460
9PJ9|1|a|A|1461
*
9PJ9|1|a|U|1478
9PJ9|1|a|A|1479
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain s
- 50S ribosomal protein L23
Coloring options: