J3_9PKG_016

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9PKG|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|A|2551
9PKG|1|L5|G|2552
9PKG|1|L5|A|2553
9PKG|1|L5|U|2554
9PKG|1|L5|G|2555
*
9PKG|1|L5|C|2572
9PKG|1|L5|A|2573
9PKG|1|L5|G|2574
9PKG|1|L5|U|2575
*
9PKG|1|L5|A|2757
9PKG|1|L5|G|2758
9PKG|1|L5|G|2759
9PKG|1|L5|G|2760
9PKG|1|L5|U|2761
9PKG|1|L5|G|2762
9PKG|1|L5|U|2763
9PKG|1|L5|A|2764
9PKG|1|L5|A|2765
9PKG|1|L5|A|2766
9PKG|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27