J3_9PKG_024

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9PKG|1|L5|U|4882, 9PKG|1|L5|A|4938, 9PKG|1|L5|C|4940, 9PKG|1|L5|A|4943, 9PKG|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|G|4751
9PKG|1|L5|U|4752
9PKG|1|L5|U|4753
9PKG|1|L5|G|4754
*
9PKG|1|L5|C|4879
9PKG|1|L5|C|4880
9PKG|1|L5|U|4881
9PKG|1|L5|U|4882
9PKG|1|L5|C|4883
*
9PKG|1|L5|G|4936
9PKG|1|L5|C|4937
9PKG|1|L5|A|4938
9PKG|1|L5|C|4939
9PKG|1|L5|C|4940
9PKG|1|L5|G|4941
9PKG|1|L5|C|4942
9PKG|1|L5|A|4943
9PKG|1|L5|C|4944
9PKG|1|L5|G|4945
9PKG|1|L5|U|4946
9PKG|1|L5|U|4947
9PKG|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a