J3_9PR4_004

3D structure

PDB id

9PR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PR4_004 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.171

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9PR4|1|A|C|1930
9PR4|1|A|A|1931
9PR4|1|A|G|1932
*
9PR4|1|A|C|1942
9PR4|1|A|A|1943
9PR4|1|A|C|1944
9PR4|1|A|A|1945
9PR4|1|A|C|1946
*
9PR4|1|A|G|1970
9PR4|1|A|A|1971
9PR4|1|A|A|1972
9PR4|1|A|G|1973

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial