J3_9PRD_016

3D structure

PDB id

9PRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CUUCAG*CGCAAGU*AAAGACG

Length

20 nucleotides

Bulged bases

9PRD|1|AA|U|1270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PRD|1|AA|C|1268
9PRD|1|AA|U|1269
9PRD|1|AA|U|1270
9PRD|1|AA|C|1271
9PRD|1|AA|A|1272
9PRD|1|AA|G|1273
*
9PRD|1|AA|C|1302
9PRD|1|AA|G|1303
9PRD|1|AA|C|1304
9PRD|1|AA|A|1305
9PRD|1|AA|A|1306
9PRD|1|AA|G|1307
9PRD|1|AA|U|1308
*
9PRD|1|AA|A|1317
9PRD|1|AA|A|1318
9PRD|1|AA|A|1319
9PRD|1|AA|G|1320
9PRD|1|AA|A|1321
9PRD|1|AA|C|1322
9PRD|1|AA|G|1323

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A1

28S ribosomal protein S35, mitochondrial

Chain AC

28S ribosomal protein S24, mitochondrial

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AG

28S ribosomal protein S9, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial