J3_9PRX_004

3D structure

PDB id

9PRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PRX_004 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1717

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9PRX|1|A|C|1930
9PRX|1|A|A|1931
9PRX|1|A|G|1932
*
9PRX|1|A|C|1942
9PRX|1|A|A|1943
9PRX|1|A|C|1944
9PRX|1|A|A|1945
9PRX|1|A|C|1946
*
9PRX|1|A|G|1970
9PRX|1|A|A|1971
9PRX|1|A|A|1972
9PRX|1|A|G|1973

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial