J3_9PZG_016

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UAU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

9PZG|1|A|U|1183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PZG_016 not in the Motif Atlas

Geometric match to J3_8B0X_031

Geometric discrepancy: 0.2575

The information below is about J3_8B0X_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_40706.1

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9PZG|1|A|U|1116
9PZG|1|A|A|1117
9PZG|1|A|U|1118
*
9PZG|1|A|A|1155
9PZG|1|A|G|1156
9PZG|1|A|A|1157
9PZG|1|A|C|1158
9PZG|1|A|U|1159
9PZG|1|A|G|1160
9PZG|1|A|C|1161
*
9PZG|1|A|G|1175
9PZG|1|A|A|1176
9PZG|1|A|G|1177
9PZG|1|A|G|1178
9PZG|1|A|A|1179
9PZG|1|A|A|1180
9PZG|1|A|G|1181
9PZG|1|A|G|1182
9PZG|1|A|U|1183
9PZG|1|A|G|1184

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain I

Small ribosomal subunit protein uS9