J3_9Q1Q_010
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAC*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1Q_010 not in the Motif Atlas
- Geometric match to J3_5D8H_001
- Geometric discrepancy: 0.2235
- The information below is about J3_5D8H_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37832.2
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9Q1Q|1|5|G|1969
9Q1Q|1|5|A|1970
9Q1Q|1|5|C|1971
*
9Q1Q|1|5|G|1995
9Q1Q|1|5|C|1996
9Q1Q|1|5|U|1997
9Q1Q|1|5|A|1998
9Q1Q|1|5|A|1999
9Q1Q|1|5|G|2000
9Q1Q|1|5|G|2001
*
9Q1Q|1|5|C|2016
9Q1Q|1|5|A|2017
9Q1Q|1|5|C|2018
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain s
- 60S acidic ribosomal protein P0
- Chain t
- uL11
Coloring options: