J3_9Q1S_010

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAU*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q1S_010 not in the Motif Atlas

Geometric match to J3_5D8H_001

Geometric discrepancy: 0.3112

The information below is about J3_5D8H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.2

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

4

Unit IDs

9Q1S|1|5|G|1969
9Q1S|1|5|A|1970
9Q1S|1|5|U|1971
*
9Q1S|1|5|G|1995
9Q1S|1|5|C|1996
9Q1S|1|5|U|1997
9Q1S|1|5|A|1998
9Q1S|1|5|A|1999
9Q1S|1|5|G|2000
9Q1S|1|5|G|2001
*
9Q1S|1|5|C|2016
9Q1S|1|5|A|2017
9Q1S|1|5|C|2018

Current chains

Chain 5

28S ribosomal RNA

Nearby chains