J3_9Q2T_020
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 9Q2T|1|5|C|4116, 9Q2T|1|5|U|4117, 9Q2T|1|5|U|4118, 9Q2T|1|5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q2T_020 not in the Motif Atlas
- Homologous match to J3_9PN5_019
- Geometric discrepancy: 0.2184
- The information below is about J3_9PN5_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60469.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9Q2T|1|5|G|4091
9Q2T|1|5|G|4092
9Q2T|1|5|G|4093
9Q2T|1|5|G|4094
*
9Q2T|1|5|C|4114
9Q2T|1|5|G|4115
9Q2T|1|5|C|4116
9Q2T|1|5|U|4117
9Q2T|1|5|U|4118
9Q2T|1|5|C|4119
9Q2T|1|5|U|4120
9Q2T|1|5|G|4121
9Q2T|1|5|G|4122
9Q2T|1|5|C|4123
9Q2T|1|5|G|4124
9Q2T|1|5|C|4125
9Q2T|1|5|C|4126
9Q2T|1|5|A|4127
9Q2T|1|5|A|4128
9Q2T|1|5|G|4129
*
9Q2T|1|5|C|4155
9Q2T|1|5|G|4156
9Q2T|1|5|A|4157
9Q2T|1|5|C|4158
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain G
- Large ribosomal subunit protein eL8
- Chain Z
- 60S ribosomal protein L27
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34
- Chain p
- 60S ribosomal protein L37a
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