J3_9Q2T_029

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9Q2T|1|9|A|45, 9Q2T|1|9|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q2T_029 not in the Motif Atlas

Homologous match to J3_9H3G_029

Geometric discrepancy: 0.1243

The information below is about J3_9H3G_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-cWS-tHH-tSS-cWW-F-F

Number of instances in this motif group

7

Unit IDs

9Q2T|1|9|A|40
9Q2T|1|9|G|41
9Q2T|1|9|A|42
9Q2T|1|9|U|43
9Q2T|1|9|U|44
9Q2T|1|9|A|45
9Q2T|1|9|A|46
9Q2T|1|9|G|47
*
9Q2T|1|9|C|479
9Q2T|1|9|G|480
9Q2T|1|9|C|481
9Q2T|1|9|G|482
9Q2T|1|9|C|483
9Q2T|1|9|A|484
9Q2T|1|9|A|485
9Q2T|1|9|A|486
9Q2T|1|9|U|487
*
9Q2T|1|9|A|512
9Q2T|1|9|G|513
9Q2T|1|9|U|514

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EF

Elongation factor 2

Chain JJ

40S ribosomal protein S9

Chain XX

40S ribosomal protein S23