J3_9Q3Q_008
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- GGA*UUUAAAG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3Q_008 not in the Motif Atlas
- Homologous match to J3_6PRV_001
- Geometric discrepancy: 0.1667
- The information below is about J3_6PRV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37832.2
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9Q3Q|1|A|G|1055
9Q3Q|1|A|G|1056
9Q3Q|1|A|A|1057
*
9Q3Q|1|A|U|1081
9Q3Q|1|A|U|1082
9Q3Q|1|A|U|1083
9Q3Q|1|A|A|1084
9Q3Q|1|A|A|1085
9Q3Q|1|A|A|1086
9Q3Q|1|A|G|1087
*
9Q3Q|1|A|C|1102
9Q3Q|1|A|A|1103
9Q3Q|1|A|C|1104
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein bL36A
- Chain J
- 50S ribosomal protein L11
Coloring options: