J3_9Q3Q_013
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 9Q3Q|1|A|A|2198
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3Q_013 not in the Motif Atlas
- Homologous match to J3_8B0X_021
- Geometric discrepancy: 0.0381
- The information below is about J3_8B0X_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9Q3Q|1|A|C|2091
9Q3Q|1|A|U|2092
9Q3Q|1|A|G|2093
*
9Q3Q|1|A|C|2196
9Q3Q|1|A|U|2197
9Q3Q|1|A|A|2198
9Q3Q|1|A|A|2199
9Q3Q|1|A|C|2200
*
9Q3Q|1|A|G|2223
9Q3Q|1|A|G|2224
9Q3Q|1|A|A|2225
9Q3Q|1|A|C|2226
9Q3Q|1|A|A|2227
9Q3Q|1|A|G|2228
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain H
- Large ribosomal subunit protein bL9
- Chain Z
- 50S ribosomal protein L28
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