J3_9Q3Q_031
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 9Q3Q|1|a|U|1212, 9Q3Q|1|a|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3Q_031 not in the Motif Atlas
- Homologous match to J3_8B0X_029
- Geometric discrepancy: 0.0897
- The information below is about J3_8B0X_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9Q3Q|1|a|C|990
9Q3Q|1|a|U|991
9Q3Q|1|a|U|992
9Q3Q|1|a|G|993
9Q3Q|1|a|A|994
9Q3Q|1|a|C|995
9Q3Q|1|a|A|996
9Q3Q|1|a|U|997
*
9Q3Q|1|a|A|1044
9Q3Q|1|a|C|1045
9Q3Q|1|a|A|1046
9Q3Q|1|a|G|1047
*
9Q3Q|1|a|C|1210
9Q3Q|1|a|U|1211
9Q3Q|1|a|U|1212
9Q3Q|1|a|A|1213
9Q3Q|1|a|C|1214
9Q3Q|1|a|G|1215
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain n
- Small ribosomal subunit protein uS14
Coloring options: