J3_9Q3R_010
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 9Q3R|1|A|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3R_010 not in the Motif Atlas
- Homologous match to J3_8B0X_019
- Geometric discrepancy: 0.0811
- The information below is about J3_8B0X_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9Q3R|1|A|C|1306
9Q3R|1|A|A|1307
9Q3R|1|A|A|1308
9Q3R|1|A|G|1309
*
9Q3R|1|A|C|1605
9Q3R|1|A|C|1606
9Q3R|1|A|C|1607
9Q3R|1|A|A|1608
9Q3R|1|A|A|1609
9Q3R|1|A|A|1610
9Q3R|1|A|C|1611
*
9Q3R|1|A|G|1620
9Q3R|1|A|U|1621
9Q3R|1|A|G|1622
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L34
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