J3_9Q3R_016
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CUA*UAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 9Q3R|1|A|U|2334, 9Q3R|1|A|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3R_016 not in the Motif Atlas
- Geometric match to J3_8B0X_022
- Geometric discrepancy: 0.0453
- The information below is about J3_8B0X_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.3
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9Q3R|1|A|C|2295
9Q3R|1|A|U|2296
9Q3R|1|A|A|2297
*
9Q3R|1|A|U|2321
9Q3R|1|A|A|2322
9Q3R|1|A|G|2323
*
9Q3R|1|A|C|2332
9Q3R|1|A|A|2333
9Q3R|1|A|U|2334
9Q3R|1|A|A|2335
9Q3R|1|A|A|2336
9Q3R|1|A|G|2337
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- Large ribosomal subunit protein uL5
- Chain Q
- Large ribosomal subunit protein uL18
- Chain Y
- 50S ribosomal protein L27
- Chain x
- Transfer RNA; tRNA
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