J3_9Q3R_027
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9Q3R|1|a|U|871, 9Q3R|1|a|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3R_027 not in the Motif Atlas
- Homologous match to J3_8B0X_004
- Geometric discrepancy: 0.0328
- The information below is about J3_8B0X_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9Q3R|1|a|C|826
9Q3R|1|a|U|827
9Q3R|1|a|U|828
9Q3R|1|a|G|829
*
9Q3R|1|a|C|857
9Q3R|1|a|G|858
9Q3R|1|a|G|859
9Q3R|1|a|A|860
9Q3R|1|a|G|861
*
9Q3R|1|a|C|868
9Q3R|1|a|G|869
9Q3R|1|a|U|870
9Q3R|1|a|U|871
9Q3R|1|a|A|872
9Q3R|1|a|A|873
9Q3R|1|a|G|874
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain h
- Small ribosomal subunit protein uS8
- Chain u
- Small ribosomal subunit protein bS21
Coloring options: