J3_9Q6S_065

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9Q6S|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6S_065 not in the Motif Atlas

Homologous match to J3_8B0X_029

Geometric discrepancy: 0.1704

The information below is about J3_8B0X_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9Q6S|1|2a|C|990
9Q6S|1|2a|U|991
9Q6S|1|2a|U|992
9Q6S|1|2a|G|993
9Q6S|1|2a|A|994
9Q6S|1|2a|C|995
9Q6S|1|2a|A|996
9Q6S|1|2a|U|997
*
9Q6S|1|2a|A|1044
9Q6S|1|2a|C|1045
9Q6S|1|2a|A|1046
9Q6S|1|2a|G|1047
*
9Q6S|1|2a|C|1210
9Q6S|1|2a|U|1211
9Q6S|1|2a|U|1212
9Q6S|1|2a|A|1213
9Q6S|1|2a|C|1214
9Q6S|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z