J3_9Q87_026

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9Q87|1|a|A|1304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q87_026 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0584

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9Q87|1|a|C|1300
9Q87|1|a|G|1301
9Q87|1|a|G|1302
9Q87|1|a|A|1303
9Q87|1|a|A|1304
9Q87|1|a|G|1305
*
9Q87|1|a|C|1627
9Q87|1|a|A|1628
9Q87|1|a|G|1629
*
9Q87|1|a|C|1641
9Q87|1|a|A|1642
9Q87|1|a|A|1643
9Q87|1|a|G|1644

Current chains

Chain a

23S rRNA

Nearby chains