J3_9Q87_029

3D structure

PDB id

9Q87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q87_029 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0496

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9Q87|1|a|G|1426
9Q87|1|a|G|1427
9Q87|1|a|G|1428
9Q87|1|a|A|1429
9Q87|1|a|C|1430
9Q87|1|a|G|1431
*
9Q87|1|a|C|1566
9Q87|1|a|C|1567
*
9Q87|1|a|G|1570
9Q87|1|a|A|1571
9Q87|1|a|A|1572
9Q87|1|a|A|1573
9Q87|1|a|A|1574
9Q87|1|a|G|1575
9Q87|1|a|C|1576

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2