J3_9QEG_018

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QEG_018 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.0654

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9QEG|1|Aa|G|47
9QEG|1|Aa|C|48
*
9QEG|1|Aa|G|369
9QEG|1|Aa|G|370
9QEG|1|Aa|A|371
9QEG|1|Aa|A|372
9QEG|1|Aa|U|373
9QEG|1|Aa|C|374
9QEG|1|Aa|U|375
*
9QEG|1|Aa|A|401
9QEG|1|Aa|G|402
9QEG|1|Aa|C|403

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

Small ribosomal subunit protein uS12

Chain Ap

Small ribosomal subunit protein bS16