J3_9QEG_024

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9QEG_024 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.0707

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

9QEG|1|Aa|C|945
9QEG|1|Aa|A|946
9QEG|1|Aa|A|947
9QEG|1|Aa|G|948
*
9QEG|1|Aa|C|1354
9QEG|1|Aa|U|1355
9QEG|1|Aa|A|1356
9QEG|1|Aa|G|1357
9QEG|1|Aa|U|1358
9QEG|1|Aa|A|1359
9QEG|1|Aa|A|1360
*
9QEG|1|Aa|U|1382
9QEG|1|Aa|G|1383
9QEG|1|Aa|A|1384
9QEG|1|Aa|A|1385
9QEG|1|Aa|U|1386
9QEG|1|Aa|A|1387
9QEG|1|Aa|C|1388
9QEG|1|Aa|G|1389

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ag

Small ribosomal subunit protein uS7

Chain Ai

Small ribosomal subunit protein uS9