J3_9QEG_026
3D structure
- PDB id
- 9QEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9QEG|1|Aa|A|984, 9QEG|1|Aa|G|985, 9QEG|1|Aa|A|987
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9QEG_026 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0676
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9QEG|1|Aa|U|964
9QEG|1|Aa|U|965
9QEG|1|Aa|U|966
9QEG|1|Aa|A|967
9QEG|1|Aa|A|968
9QEG|1|Aa|U|969
9QEG|1|Aa|U|970
9QEG|1|Aa|C|971
*
9QEG|1|Aa|G|982
9QEG|1|Aa|A|983
9QEG|1|Aa|A|984
9QEG|1|Aa|G|985
9QEG|1|Aa|A|986
9QEG|1|Aa|A|987
9QEG|1|Aa|C|988
9QEG|1|Aa|C|989
9QEG|1|Aa|U|990
9QEG|1|Aa|U|991
9QEG|1|Aa|A|992
9QEG|1|Aa|C|993
*
9QEG|1|Aa|G|1231
9QEG|1|Aa|G|1232
9QEG|1|Aa|C|1233
9QEG|1|Aa|U|1234
9QEG|1|Aa|A|1235
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Aj
- Small ribosomal subunit protein uS10
- Chain Am
- Small ribosomal subunit protein uS13
- Chain An
- Small ribosomal subunit protein uS14B
- Chain As
- Small ribosomal subunit protein uS19
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